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2014, № 6 (167)



Nikiyan H.N., Tatlybaeva E.B. ACHIEVEMENTS AND DEVELOPMENT PROSPECTS OF ATOMIC FORCE MICROSCOPY IN MICROBIOLOGYIn this review the possibilities of atomic force microscopy in solving of microbiological problems over the last decade are considered. The main attention is paid to the achievements and successes in the field of biodetection, virology and studying the factors of biogenic and abiogenic influence on bacterial cells. Presented results show the potential of atomic force microscopy in detection and identification of single cells and molecules, investigations of mechanical and morphological properties of bacterial cells in response to different influences, as well as the study of the intermolecular and intramolecular interactions.Key words: atomic force microscopy, bacterial cells, identification of molecules, detection of viral particles.

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1. Allison D.P., Mortensen N.P., Sullivan C.J., Doktycz M.J. Atomic force microscopy of biological samples // Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. — 2010. — V.2. — №6. — P. 618-634. — doi:10.1002/wnan.104

2. Kai-Chih Chang, Yu-Wei Chiang, Chin-Hao Yang, Je-Wen Liou Atomic force microscopy in biology and biomedicine // Tzu Chi Medical Journal. — 2012. — V.24. — №4. — P. 162-169.

3. Goldsbury C.S, Scheuring S, Kreplak L. Introduction to atomic force microscopy (AFM) in biology // Current Protocols in Protein Science. — 2009. — V.17. — №7. — P. 1-19. — doi:10.1002/0471140864.ps1707s58

4. Tsinberg M.B., Deryabin D.G., Denisova I.V., Nikiyan H.N. Growth and morphological features of industrial strains f Bifidobacterium and Lactobacillus in hydrolyzate-milk and hydrolyzate-soybean media // Antibiotics and chemotherapy. — 2003. — V.48. — №12. — P. 9-13.

5. Vasilchenko A.S., Yarullina D.R., Nikiyan H.N., Teslya A.V. Morphological and functional characteristics of the bacteria Bacillus cereus at various stages of the life cycle // Vestnic Orenburgskogo gosudarstvennogo universiteta. — 2012. — №10. — P. 66-71.

6. Olunina L.N., Mackova Y.A, Goncharova T.A., Gushchina Y.Y. Assessment of Azotobacter chroococcum thermoresistivity by atomic force microscopy // Prikladnaya biohimia i mikrobiologia. — 2009. — V.45. — №1. — P. 45-50.

7. Gaboriaud F., Bailet S., Dague E., Jorand F. Surface structure and nanomechanical properties of Shewanella putrefaciens bacteria at two pH values (4 and 10) determined by atomic force microscopy // Journal of bacteriology. — 2005. — V.187. — №11. — P.3864–3868.

8. Nikiyan H., Vasilchenko A., Deryabin D. Humidity-dependent bacterial cells functional morphometry investigations using atomic force microscope // International Journal of Microbiology. — 2010. — doi:10.1155/2010/704170

9. Mejias Carpio I.E., Santos C.M., Wei X., Rodrigues D.F. Toxicity of a polymer-graphene oxide composite against bacterial planktonic cells, biofilms, and mammalian cells // Nanoscale. — 2012. — V.4. — №15. — P. 4746-56. — doi:10.1039/c2nr30774j

10. Esfandiary E., Valiani A., Hashemibeni B., Moradi I., Narimani M. The evaluation of toxicity of carbon nanotubes on the human adipose-derived-stem cells in-vitro // Advanced Biomedical Research. — 2014. — V.3. — doi:10.4103/2277-9175.125729

11. Deryabin D.G., Vasilchenko A.S., Aleshina E.S., Tlyagulova A.S., Nikiyan H.N. An investigation into the interaction between carbon-based nanomaterials and Escherichia coli cells using atomic force microscopy // Rossiyskie nanotehnologii. — 2010. — V.5. — №11–12. — P. 103-108.

12. Nikiyan H., Vasilchenko A., Deryabin D. AFM investigations of various disturbing factors on bacterial cells // Microscopy: science, technology, applications and education (Microscopy book series — ISBN (13). 978-84-614-6189-9). — 2010. — №4. — V.1. — P.523-529.

13. Liu S., Wei L., Hao L., Fang N., Chang M.W, Xu R., Yang Y., Chen Y. Sharper and faster "Nano Darts" kill more bacteria: a study of antibacterial activity of individually dispersed pristine single-walled carbon nanotube // ACS Nano. — 2009. — V.3. — №12. — P. 3891–3902.

14. Liu S., Ng A.K., Xu R., Wei J., Tan C.M., Yang Y., Chen Y. Antibacterial action of dispersed single-walled carbon nanotubes on Escherichia coli and Bacillus subtilis investigated by atomic force microscopy // Nanoscale. — 2010. — V.2. — №12. — P. 2744-2750. — doi:10.1039/c0nr00441c

15. Ahmed F., Santos C.M., Vergara R.A., Tria M.C., Advincula R., Rodrigues D.F. Antimicrobial applications of electroactive PVK-SWNT nanocomposites // Environmental Science and Technology. — 2012. — V.46. — №3. — P. 1804-1810. — doi:10.1021/es202374e

16. Longo G., Kasas S. Effects of antibacterial agents and drugs monitored by atomic force microscopy // Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. — 2014. — V.6. — №3. — P. 230-244. — doi:10.1002/wnan.1258

17. Deryabin D.G., Vasilchenko A.S., Nikiyan H.N. AFM investigation of ampicillin influence on morphological and mechanical properties of Escherichia coli and Bacillus cereus cells // Antibiotiki i himeoterapia. — 2011. — V.56. — №7-8. — P. 7-12.

18. Perry C.C., Weatherly M., Beale T., Randriamahefa A. Atomic force microscopy study of the antimicrobial activity of aqueous garlic versus ampicillin against Escherichia coli and Staphylococcus aureus // Journal of the Science of Food and Agriculture. — 2009. — V.89. — №6. — P. 958–964. — doi:10.1002/jsfa.3538

19. Yang L., Wang K., Tan. W., He X., Jin R., Li J., Li H. Atomic force microscopy study of different effects of natural and semisynthetic ?-lactam on the cell envelope of Escherichia coli // Anal. Chem. — 2006. — V. 78. — P. 7341-7345.

20. Mohan K.V.K., Rao S.S., Atreya C.D. Evaluation of antimicrobial peptides as novel bactericidal agents for room temperature-stored platelets // Transfusion. — 2010. — V.50. — P. 166-173.

21. Vasilchenko A.S., Nikiyan H.N, Deryabin D.G. Atomic force microscopy study of magainin 2 versus human platelet extract action on Escherichia coli and Bacillus cereus // Journal of biological research. — 2013. — №19. — P. 3-9.

22. Meincken M., Holroyd D.L., Rautenbach M. Atomic force microscopy study of the effect of antimicrobial peptides on the cell envelope of Escherichia coli // Antimicrobial Agents and Chemotherapy. — 2005. — V. 49. № 10. — P. 4085-4092.

23. Filonov A., Yaminsky I. Data processing and analysis in scanning probe microscopy: algorithms and methods // Nanoindustria. — 2007. — №2. — P. 32-34.

24. Alsteens D., Verbelen C., Dague E., Raze D., Baulard A., Dufrene Y. Organization of the mycobacterial cell wall: a nanoscale view // Pflugers Archiv European Journal of Physiology. — 2008. — V.456. — № 1. — P. 117-125.

25. Gilbert Y., Deghorain M., Wang L., Xu B., Pollheimer P.D., Gruber H.J., Errington J., Hallet B., Haulot X., Verbelen C., Hols P., Dufrene Y. Single-molecule force spectroscopy and imaging of the vancomycin/d-Ala-d-Ala interaction // Nano Letters. — 2007. — V.7. — №3. — P. 796-801.

26. Ramos-Vara J.A. Technical aspects of immunohistochemistry // Veterinary pathology. — 2005. — V.42. — №4. — P. 405-426.

27. Kuo J. Electron microscopy: methods and protocols. Humana Press. — 2007. — 608 p. — ISSN 1064-3745.

28. Kuznetsov V.Y., Ivanov Y.D., Archakov A.I. Atomic force microscopy revelation of molecular complexes in the multiprotein cytochrome P450 2B4-containing system // Proteomics. — 2004. V.4. — №.8. — P. 2390-2396.

29. Method for detecting toxic proteins by means of scanning probe microscope investigation/ Bykov [et.al.] ; ZAO "NT-MDT". — № 2003121587/13; Application 16.07.2003; Date of publication 10.01.2006 Patent 2267787 Russian Federation, MКI G01N 33/577.

30. Maliuchenko, N. V. Detection of immune complexes using atomic force microscopy // Biofizika. — 2004. — V. 49. — № 6. — P. 1008-1014.

31. Dykman L.A., Staroverov S.A., Bogatyrev V.A., Shchyogolev S.Yu. Gold nanoparticles as an antigen carrier and as an adjuvant. In: Gold Nanoparticles: Properties, Characterization and Fabrication, Ed. by Chow P.E. — New York: Nova Science Publishers. — 2010. — Ch.2. — P. 59–88.

32. Tatlybaeva E.B., Nikiyan H.N., Vasilchenko A.S., Deryabin D.G. Atomic force microscopy recognition of protein A on Staphylococcus aureus cell surfaces by labeling with IgG-Au conjugates // Beilstein J. Nanotechnol. — 2013. — №4. — P. 743-749.

33. Nordstrom M., Keller S., Lillemose M., Johansson A., Dohn S., Haefliger D., Blagoi G., Havsteen-Jakobsen M., Boisen A. SU-8 cantilevers for bio/chemical sensing; Fabrication, characterisation and development of novel read-out methods // Sensors. — 2008. — V. 8. — №3. — P. 1595-1612.

34. Steffens C., Leite F.L., Bueno C.C., Manzoli A., Herrmann P.S. Atomic force microscopy as a tool applied to nano/biosensors // Sensors. — 2012. — V.12. — №6. — P. 8278-8300. — doi:10.3390/s120608278

35. Safenkova I.V., Zherdev A.V., Dzantiev B.B. Application of atomic force microscopy for characterization of the individual intermolecular interactions // Uspehi biologicheskoi himii. — 2012. — V. 52. — P. 281-314.

36. Fuhrmann A., Schoening J.C., Anselmetti D., Staiger D., Ros R. Quantitative analysis of single-molecule RNA-protein interaction // Biophysical Journal. — 2009. — V.96. — №12. — P. 5030-5039.

37. Lynch S., Baker H., Byker S.G., Zhou D., Sinniah K. Single molecule force spectroscopy on G-quadruplex DNA // Chemistry a European journal. — 2009. — V.15. — №33. — P. 8113–8116.

38. Eckel R., Wilking S.D., Becker A., Sewald N., Ros R., Anselmetti D. Single-molecule experiments in synthetic biology: an approach to the affinity ranking of DNA-binding peptides // Angewantde chemie international edition. — 2005. — V.44. — №25. — P. 3921-3924.

39. Porter-Peden L., Kamper S.G., Wal M.V., Blankespoor R., Sinniah K. Estimating kinetic and thermodynamic parameters from single molecule enzyme-inhibitor interactions // Langmuir. — 2008. — V.24. — №20. — P. 11556-11561.

40. Yew Z.T., Olmsted P.D., Paci E. Free energy landscapes of proteins: insights from mechanical probes // Single-Molecule Biophysics. — 2012. — V.146. — P. 395-417.

41. Kuznetsov Y.G., Daijogo S., Zhou J., Semler B.L., McPherson A. Atomic force microscopy analysis of icosahedral virus RNA // Journal of molecular biology. — 2005. — V.347. — №1. — P. 41-52.

42. Kuznetsov Y.G., McPherson A. Atomic force microscopy in imaging of viruses and virus-infected cells // Microbiology and molecular biology reviews. — 2011. — V.75. — №2. — P. 268-85. — doi:10.1128/MMBR.00041-10

43. Porter M.D., Driskell J.D., Kwarta K.M., Lipert R.J., Neill J.D., Ridpath J.F. Detection of viruses: atomic force microscopy and surface enhanced Raman spectroscopy // Developments in biologicals. — 2006. — V.126. — P. 31-39.

44. Shebanova A.S., Savvateev M.N., Maluchenko Т.V., Trofimov D.Yu., Agapov I.I. A new method for quantitative estimation of virus particles number // Biomedicinskaya himia. — 2009. — V.55. — V.5. — P. 610-620.

45. Carrasco C., Luque A., Hernando-Perez M., Miranda R., Carrascosa J.L., Serena P.A., de Ridder M., Arvind R., Gomez-Herrero J., Schaap I.A.T., Reguera D., de Pablo P.J. Built-In mechanical stress in viral shells // Biophysical Journal. — 2011. — V.100. — № 4. — P. 1100-1108.

46. Hernando-Perez M., Miranda R., Aznar M., Carrascosa J.L., Schaap I.A.T., Reguera D., Pablo P.J. Direct measurement of phage phi29 stiffness provides evidence of internal pressure // Small. — 2012. — V.8. — №15. — P. 2366-2370. — doi:10.1002/smll.201200664

47. Poleschuyk N., Astashonok A., Rubanik L., Kapitulets S., Zhavnerko G., Paribok I., Farnia P., Yaminsky I. Nanotechnological approaches to the diagnostics of bacterial and viral infections // Nanoindustria. — 2012. — V.35. — P. 48-54.


About this article

Authors: Nikiyan A.N., Tatlybaeva E.B.

Year: 2014


Editor-in-chief
Sergey Aleksandrovich
MIROSHNIKOV

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